EGAPx is the publicly accessible version of the updated NCBI Eukaryotic Genome Annotation Pipeline. ⚠️ Fungi, protists and nematodes are out-of-scope for EGAPx. We recommend using a different ...

The goal of this pipeline is to perform cgMLST on bacterial genomes. As input, it requires an assembly for each sample you want to analyze in the form of a single ‘.fasta’ file. Importantly, the ...